Manuscripts
- Kagale,S.,Koh,C.,Clarke,W.E.,Bollina,V.,Parkin,I.A.P.,Sharpe,A.G. Analysis of Genotyping-by-Sequencing (GBS) Data. Methods Molecular Biology. 2016;1374:269-84
- Buhrow,L.,Loewen,M. Identification of an attenuated Barley Stripe Mosaic Virus for targeted knockdown of Fusarium Head Blight-response related genes. Plant Methods. 2016:2;12:12
- Li,Q.,Zheng,Q.,Shen,W.,Fowler,D.B.,Wei,Y.,Zou,J. Understanding the biochemical basis of temperature induced lipid pathway adjustments in plants. Plant Cell. 2015 Jan 27(1):86-103.
- Loewen,M.C.,Rajagopalan,N.,Halasz,A.,Lu,Y.,Liu,E.,Monteil-Rivera,F. In vitro differentiation of the transport specificities of naturally occurring recombinant Lr34 variants. 14th Cereal Rust and Powdery Mildew Conference, Denmark
- Li,Q.,Shen,W.,Zheng,Q.,Fowler,D.B.,Zou,J. Adjustments of lipid pathways in plant adaptation to temperature stress. Plant Signaling and Behavior. 2016 Jan 2;11(1):(1559-2324)
- Sharpe,A.G., International Wheat Genome Sequencing Consortium. A chromosome-based draft sequence of the hexaploid bread wheat genome."Science Jul 2014: 345(6194):1251788”
- Asif,M.,Eudes,F.,Goyal,A.,Amundsen,E.,Randhawa,H.,Spaner,D. Organelle antioxidants improved microspore embryogenesis in wheat and triticale. In Vitro Cellular and Developmental Biology Plant November 2013, Volume 49, Issue 5, pp 489-497
- Asif,M.,Eudes,F.,Randhawa,H.,Amundsen,E.,Yanke,J.,Spaner,D. Induction medium osmolality improves microspore embryogenesis in wheat and triticale. In Vitro Cellular and Developmental Biology Plant March 2014, Volume 50, Issue 1, pp 121-126
- Asif,M.,Eudes,F.,Randhawa,H.,Amundsen,E.,Yanke,J.,Spaner,D. Phytosulfokine alpha enhances microspore embryogenesis in both triticale and wheat. Plant Cell, Tissue and Organ Culture January 2014 116: 125-130.
- Asif,M.,Eudes,F.,Randhawa,H.,Amundsen,E.,Yanke,J.,Spaner,D. Cefotaxime prevents microbial contamination and improves microspore embryogenesis in wheat and triticale. Plant Cell Reports 2013 32:1637-1646.
- Sinha,R.,Eudes,F. Dimethyl Tyrosine conjugated peptide prevents oxidative damage and death of triticale and wheat microspores. Plant Cell, Tissue and Organ Culture (PCTOC) July 2015, Volume 122, Issue 1, pp 227-237
- Jordan,K.W.,Wang,S.,Lun,Y.,Gardiner,L.J.,MacLachlan,R.,Hucl,P.,Akhunov, E. A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homologous genomes. Genome Biology 2015 16:48
- Wang,Y.et.al. 2014 Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array. Plant Biotechnology Journal 2014 Aug : 787-796
- Tulpan,D.,Leger,S.,Tchagang,A.,Pan,Y. Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants. BMC Genomics. 2015 Apr 15;16:299
- Čuperlović-Culf,M.,Culf,A. Metabolism, protein deacetylation and their interaction in biotic response, fungal growth and beyond. International Journal of Botany. 2014 4: 48-60
- Cuperlovic-Culf,M.,Touaibia,M.,St-Coeur,P.D.,Poitras,J.,Morin,P.,Culf,A.S. Metabolic Effects of Known and Novel HDAC and SIRT Inhibitors in Glioblastomas Independently or Combined with Temozolomide Metabolites. 2014, 4:807-30.
- Lahlali,R.,KarunakaranC.,Wang,L.,Willick,I.,Schmidt,M.,Liu,X.,Borondics,F.,Forseille,L.,Fobert,P.R.,Tanino,K.,Hallin,E. Synchrotron based phase contrast X-ray imaging combined with FTIR spectroscopy reveals structural and biomolecular differences in spikelets play a significant role in resistance to Fusarium in wheat. BMC Plant Biology (2015)15(1): 24
- Buhrow,L.,Zaharia,L.I.,Loewen,M.C. Abscisic and gibberellic acid phytohormones modulate Fusarium Head Blight pathogenesis in wheat. PLOS Pathogen May 01, 2015
- Murmu,J.,Wilton,M.,Allard,G.,Pandeya,R.,Desveaux,D.,Singh,J.,Subramaniam,R. Arabidopsis GOLDEN2-LIKE (GLK) transcription factors activate jasmonic (JA)-dependent disease susceptibility to the biotrophic pathogen Hyaloperonospera arabidopsidis, as well as JA-independent plant immunity against the necrotrophic pathogen Botrytis cinerea. Molecular Plant Pathology. 2014 Feb;15 (2):174-84.
- Huner,N.P.A.,Dahal,K.,Kurepin,L.,Savitch,L.,Singh,J.,Ivanov,A.G.,Kane,K.,Sarhan,F. Potential for increased photosynthetic performance and crop productivity in response to climate change: role of CBFs and gibberellic acid. Frontiers in Chemistry, 2014 doi: 10.3389/fchem.2014.00018
- Kurepin,.L.V.,Daha,K.P.,Savitch,L.V.,Singh,J.,Bode,R.,Ivanov,A.G.,Hurry,V.,Huner,N.P.A. Role of CBFs as Integrators of Chloroplast Redox, Phytochrome and Plant Hormonal Signaling during Cold Acclimation. International Journal Molecular Science. 2013, 14(6), 12729-12763
- Venglat,P.,Xiang,D.,Wang,E.,Datla,R. Genomics of seed development:challenges and opportunities for genetic improvement of seed traits in crop plants. Biocatalysis and Agricultural Biotechnology January 2014 3:24-30
- Tchagang,A.B.,Phan,S.,Famili,F.,Pan,Y.,Cutler, A.Zou,J., A Generic Model of Transcriptional Regulatory Networks: Application to Plants under Abiotic Stress. 2013 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), Nov. 17 - 19, 2013, Houston, Texas, USA.
- Pawluczyk,M.,Weiss,J.,Links,M.G.,EgañaA.M.,Wilkinson,M.D.,Egea-Cortines,M. Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples. Analytical and Bioanalytical Chemistry, 2015. Mar; 407(7):1841-8.
- Links,M.G.,Chaban,B.,Hemmingsen,S.M.,Muirhead,K.,Hill,J.E. mPUMA: a computational approach to microbiota analysis by de novo assembly of operational taxonomic units based on protein-coding barcode sequences. Microbiome, 2013, Aug 15;1(1):23.
- Links,M.G.,Demeke,T.,Gräfenhan,T.,Hill,J.E.,Hemmingsen,S.M.,Dumonceaux,T.J. Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on Triticum and Brassica seeds. New Phytologist, 2014. Apr; 202(2):542-53.
- Town,J.R.,Links,M.G.,Fonstad,T.A.,Dumonceaux,T.J. Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance. Bioresource Technology, 2013. 151 249-257.
- Town,J.R.,Annand,H.,Pratt,D.,Dumonceaux,T.,Fonstad,T.Microbial community composition is consistent across anaerobic digesters processing wheat-based fuel ethanol waste streams. Bio resource Technology, 2014. 157:127-133.
- Quiza,L.,St-Arnaud,M.,Yergeau,E. Harnessing phytomicrobiome signaling for rhizosphere microbiome engineering. Frontiers Plant Science. 2015 Jul 14;6:507
- Lazarovit,G.,Turnbull, A.L.,Haug,B.,Links,M.G.,Hill,J.E.,Hemmingsen,S.M. Unraveling the rhizosphere using the cpn60 genomic marker and pyrosequencing. Molecular Microbial Ecology of the Rhizosphere, F.J. de Bruijn, Editor 2013, John Wiley & Sons, Inc.: Hoboken, NJ, USA. 1129-1136.
- Hemmingsen,S.M. Helping Microbes To Help Wheat. Top Crop Manager, Western Edition Carolyn King. October 2014, 40: (14) 16-18.
- Vrinten,P. “Developing Cleistogamous (Closed-Flowering) Wheat for Increased Fusarium Head Blight Resistance. Saskatchewan Research Council Newsletter Dec 2015
- Pan,Y.,Ouellet,T.,Phan,S.,Tchagang,A.,Fauteux,F.,Tulpan,D. Digitization of trait representation in microarray data analysis on wheat infected by Fusarium graminearum. 2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB2015), August 12-15, Niagara Falls, Canada
- Gou,L.,Hattori,J.,Fedak,G.,Balcerzak,M.,Sharpe,A.,Visendi,P.,Edwards,D.,Tinker,N.,Wei,Y.-M.,Chen, G.-Y.,Ouellet,T. Development and validation of Thinopyrum elongatum expressed molecular markers specific for the long arm of chromosome 7E. Crop Science 2015, 56 1: 354-363.